Document Type
Article
Version Deposited
Published Version
Publication Date
3-12-2024
Publication Title
Frontiers in Bioinformatics
DOI
10.3389/fbinf.2024.1351620
Abstract
Long-read sequencing technologies offer new opportunities to generate high-confidence phased whole-genome sequencing data for robust pharmacogenetic annotation. Here, we describe a new user-friendly R package, ursaPGx, designed to accept multi-sample phased whole-genome sequencing data VCF input files and output star allele annotations for pharmacogenes annotated in PharmVar.
Recommended Citation
Calendo G, Kusic D, Madzo J, Gharani N, Scheinfeldt L. ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data. Front Bioinform. 2024 Mar 12;4:1351620. doi: 10.3389/fbinf.2024.1351620. PMID: 38533129; PMCID: PMC10963438.
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Comments
© 2024 Calendo, Kusic, Madzo, Gharani and Scheinfeldt. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).