Faculty members in the College of Science & Mathematics can deposit their publications here if they are cleared for public access. This includes Open Access journal articles, accepted manuscripts when allowed by the publisher, technical reports, conference presentations, and any works published under a Creative Commons license.
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Submissions from 2021
Air-Spun Silk-Based Micro-/Nanofibers and Thin Films for Drug Delivery, Christopher R Gough and Xiao Hu
Protein and Polysaccharide-Based Electroactive and Conductive Materials for Biomedical Applications, Xiao Hu, Samuel Ricci, Sebastian Naranjo Naranjo, Zachary Hill, and Peter Gawason
Assessment of Sport Nutrition Knowledge, Dietary Practices, and Sources of Nutrition Information in NCAA Division III Collegiate Athletes., Dylan J. Klein, Kaitlyn M Eck, Alan J Walker, Joseph K Pellegrino, and Daniel J Freidenreich
A Systematic Review of Black American Same-Sex Couples Research: Laying the Groundwork for Culturally-Specific Research and Interventions, Jonathan M. Lassiter, Jagadīśa-devaśrī Dacus, and Mallory O. Johnson
Selection Rule for Topological Amplifiers in Bogoliubov de Gennes Systems, Hong Y. Ling and Ben Kain
Flexible Nanopaper Composed of Wood-Derived Nanofibrillated Cellulose and Graphene Building Blocks, Qing Li, Ming Dai, Xueren Qian, Tian Liu, Zhenbo Liu, Yu Liu, Ming Chen, Wang He, Suqing Zeng, Yu Meng, Chenchen Dai, Jing Shen, Yingtao Liu, Wenshuai Chen, Wenbo Liu, and Ping Lu
Comparison of Design Approaches for Low-Cost Sampling Mechanisms in Open-Source Chemical Instrumentation, Greggory Murray, Samuel Bednarski, Michael Hall, Samuel W. Foster, SiJun Jin, Joshua J. Davis, Wei Xue, Eric Constans, and James P. Grinias
Ensemble Learning using Error Correcting Output Codes: New Classification Error Bounds, Hieu Nguyen, Mohammed Sarosh Khan, Nicholas Kaegi, Shen-Shyang Ho, Jonathan Moore, Logan Borys, and Lucas Lavalva
Artemisinin DNA base interaction studies in presence of Fe (II): LC/TOF MS separation of reaction products, Kogila Oke and Amos Mugweru
Effects of Ionic Liquids on Metalloproteins., Aashka Y Patel, Keertana S Jonnalagadda, Nicholas Paradis, Timothy Vaden, Chun Wu, and Gregory A. Caputo
Replicating analyses of item response curves using data from the Force and Motion Conceptual Evaluation, Connor J. Richardson, Trevor Smith, and Paul J. Walter
Silk-Cellulose Acetate Biocomposite Materials Regenerated from Ionic Liquid, Ashley Rivera-Galetti, Chrtstopher R. Gough, Farhan Kaleem, Michael Burch, Chris Ratcliffe, Ping Lu, David Salas-de la Cruz, and Xiao Hu
Structural and Morphological Properties of Wool Keratin and Cellulose Biocomposites Fabricated Using Ionic Liquids, Karleena Rybacki, Stacy A. Love, Bailey Blessing, Abneris Morales, Emily McDermott, Kaylyn Cai, Xiao Hu, and David Salas-de la Cruz
How do novel seat positions impact usability of child restraints?, Patrice Dolhonde Tremoulet, Aditya Belwadi, Brendan Corr, Shreyas Sarfare, Tom Seacrist, and Sophia Tushak
Usability of Electronic Health Record-Generated Discharge Summaries: Heuristic Evaluation., Patrice Dolhonde Tremoulet, Priyanka D Shah, Alisha A Acosta, Christian W Grant, Jon T Kurtz, Peter Mounas, Michael Kirchhoff, and Elizabeth Wade
Role of Antizyme Inhibitor Proteins in Cancers and Beyond, Venella Tulluri and Venkatesh V. Nemmara
Accessing Improbable Foldamer Shapes with Strained Macrocycles., Ko Urushibara, Yann Ferrand, Zhiwei Liu, Kosuke Katagiri, Masatoshi Kawahata, Estelle Morvan, Ryan D'Elia, Vojislava Pophristic, Aya Tanatani, and Ivan Huc
Acceptability and effectiveness of a novel cycling training on the parkinsonian motor and psychiatric symptoms in individuals with schizophrenia: A pilot study., Mehmet Uygur and Thomas J. Dinzeo
Bruton's Tyrosine Kinase Targeting in Multiple Myeloma., Max Von Suskil, Kazi Nasrin Sultana, Weam Othman Elbezanti, Omar S Al-Odat, Robert Chitren, Amit K Tiwari, Kishore B Challagundla, Sandeep Kumar Srivastava, Subash C. Jonnalagadda, Tulin Budak-Alpdogan, and Manoj K Pandey
Dual-Crystallizable Silk Fibroin/Poly(L-lactic Acid) Biocomposite Films: Effect of Polymer Phases on Protein Structures in Protein-Polymer Blends, Fang Wang, Yingying Li, Christopher R. Gough, Qichun Liu, and Xiao Hu
Characterization of gut microbiome and metabolome in Helicobacter pylori patients in an underprivileged community in the United States, Brian White, John D Sterrett, Zoya Grigoryan, Lauren Lally, Jared D Heinze, Hyder Alikhan, Christopher A Lowry, Lark Perez, Joshua DeSipio, and Sangita Phadtare
Deciphering hierarchical organization of topologically associated domains through change-point testing., Haipeng Xing, Yingru Wu, Michael Q Zhang, and Yong Chen
Synergistic interactions of ionic liquids and antimicrobials improve drug efficacy., Daniel D Yang, Nicholas J Paterna, Alexandria S Senetra, Kaitlyn R Casey, Phillip D Trieu, Gregory A. Caputo, Timothy Vaden, and Benjamin Carone
Chemical, Thermal, Time, and Enzymatic Stability of Silk Materials with Silk I Structure, Meihui Zhao, Zhenzhen Qi, Xiaosheng Tao, Chad Newkirk, Xiao Hu, and Shenzhou Lu
Submissions from 2020
Social Comparison Features in Physical Activity Promotion Apps: Scoping Meta-Review., Danielle Arigo, Megan M Brown, Kristen Pasko, and Jerry Suls
Divergence of the dielectric constant in ultrathin granular metal films near the percolation threshold, H. Bakkali, E. Blanco, Samuel Lofland, and M. Dominguez
Protein-Polysaccharide Composite Materials: Fabrication and Applications., Elizabeth J Bealer, Shola Onissema-Karimu, Ashley Rivera-Galletti, Maura Francis, Jason Wilkowski, David Salas-de la Cruz, and Xiao Hu
Submesoscale Kinematic Properties in Summer and Winter Surface Flows in the Northern Gulf of Mexico, M. Berta, A. Griffa, A. C. Haza, J. Horstmann, Helga Huntley, R. Ibrahim, B. Lund, T. M. Ozgokmen, and A. C. Poje
The Impact of Composition and Morphology on Ionic Conductivity of Silk/Cellulose Bio-Composites Fabricated from Ionic Liquid and Varying Percentages of Coagulation Agents., Bailey Blessing, Cory Trout, Abneris Morales, Karleena Rybacki, Stacy A Love, Guillaume Lamoureux, Sean M O'Malley, Xiao Hu, and David Salas-de la Cruz
NPC1 deficiency impairs cerebellar postnatal development of microglia and climbing fiber refinement in a mouse model of Niemann-Pick disease type C., Bridget R Boyle, Sierra E Melli, Ruth S Altreche, Zachary M Padron, Fawad A K Yousufzai, Sarah Kim, Mariella D Vasquez, Dawn M Carone, Benjamin Carone, and Ileana Soto Reyes
A Data Scientist Looks at Covid19 Part II: Mythbusting, Anthony Breitzman
A Data Scientist Looks at Covid-19 Part I: Local and National Statistics, Anthony Breitzman
Data Science in the Time of COVID-19, Tony Breitzman
In Situ Electric-Field Study of Surface Effects in Domain Engineered Pb(In1/2Nb1/2)O3-Pb(Mg1/3Nb2/3)O3-PbTiO3 Relaxor Crystals by Grazing Incidence Diffraction, Markys G. Cain, Margo Staruch, Paul Thompson, Christopher Lucas, Didier Wermeille, Yves Kayser, Burkhard Beckhoff, Samuel Lofland, and Peter Finkel
Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq., Yong Chen, Yunfei Wang, Xin Liu, Jian Xu, and Michael Q Zhang
Analyses of the oncogenic BRAFD594G variant reveal a kinase-independent function of BRAF in activating MAPK signaling, Nicholas J. Cope, Borna Novak, Zhiwei Liu, Amber Y. Gunderwala, Matthew Connolly, and Zhihong Wang
It's in the bag: Tidal volumes in adult and pediatric bag valve masks, Benjamin Dafilou, Daniel Schwester, Nathan Ruhl, and Andreia Marques-Baptista
Protein and Polysaccharide-Based Fiber Materials Generated from Ionic Liquids: A Review., Christopher R Gough, Ashley Rivera-Galletti, Darrel A Cowan, David Salas-de la Cruz, and Xiao Hu
Deficiency of Complement Component C1Q Prevents Cerebrovascular Damage and White Matter Loss in a Mouse Model of Chronic Obesity., Leah C Graham, Heidi E Kocalis, Ileana Soto Reyes, and Gareth R Howell
Nucleic Acid Delivery with α-Tocopherol-Polyethyleneimine-Polyethylene Glycol Nanocarrier System., A K M Nawshad Hossian, Seetharama D Jois, Subash C. Jonnalagadda, and George Mattheolabakis
Cross-Shelf Transport Through the Interaction among a Coastal Jet, a Topographic Wave, and Tides, Helga Huntley, Charles W. McMahon, Joseph J. Kuehl, and A. D. Kirwan Jr.
Metabolomic Response of Equine Skeletal Muscle to Acute Fatiguing Exercise and Training., Dylan J. Klein, Kenneth H McKeever, Emily T Mirek, and Tracy G Anthony
A Single, Narrowly Focused CREATE Primary Literature Module Evokes Gains in Genetics Students' Self-Efficacy and Understanding of the Research Process., Alison Krufka, Kristy Kenyon, and Sally Hoskins
Identification and characterization of the lactating mouse mammary gland citrullinome, Guangyuan Li, Coleman H. Young, Bryce Snow, Amanda C. Christensen, M. Kristen Demoruelle, Venkatesh V. Nemmara, Paul R. Thompson, Heather M. Rothfuss, and Brian D. Cherrington
Epidemiological study of Trichosporon asahii infections over the past 23 years, Haitao Li, Meihong Guo, Congmin Wang, Yibo Li, Anne Marie Fernandez, Thomas N Ferraro, Rongya Yang, and Yong Chen
Recent Advances in Electrospun Sustainable Composites for Biomedical, Environmental, Energy, and Packaging Applications., Hao Liu, Christopher R Gough, Qianqian Deng, Zhenggui Gu, Fang Wang, and Xiao Hu
Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9., Xin Liu, Yong Chen, Yuannyu Zhang, Yuxuan Liu, Nan Liu, Giovanni A Botten, Hui Cao, Stuart H Orkin, Michael Q Zhang, and Jian Xu
Herpes Simplex Virus 1 Spread in Oligodendrocytic Cells Is Highly Dependent on MAL Proteolipid., José Antonio López-Guerrero, Carmen de la Nuez, Beatriz Praena, Enrique Sánchez-León, Claude Krummenacher, and Raquel Bello-Morales
Protein conformational entropy is not slaved to water, Bryan S Marques, Matthew A Stetz, Christine Jorge, Kathleen G Valentine, A Joshua Wand, and Nathaniel V Nucci
The Measurement of Strength in Children: Is the Peak Value Truly Maximal?, H. Ozake, T. Abe, Scott J. Dankel, J. P. Loenneke, T. Natsume, P. Deng, and H. Naito
The landscape of RNA polymerase II-associated chromatin interactions in prostate cancer, Susmita G Ramanand, Yong Chen, Jiapei Yuan, Kelly Daescu, Maryou Bk Lambros, Kathleen E Houlahan, Suzanne Carreira, Wei Yuan, GuemHee Baek, Adam Sharp, Alec Paschalis, Mohammed Kanchwala, Yunpeng Gao, Adam Aslam, Nida Safdar, Xiaowei Zhan, Ganesh V Raj, Chao Xing, Paul C Boutros, Johann de Bono, Michael Q Zhang, and Ram S Mani
Quantitatively ranking incorrect responses to multiple-choice questions using item response theory, Trevor Smith, Kyle J. Louis, Bartholemew J. Ricci IV, and Nasrine Bendjilali
Synthesis, in vitro, and in vivo evaluation of novel N-phenylindazolyl diarylureas as potential anti-cancer agents., Lucas N Solano, Grady L Nelson, Conor T Ronayne, Shirisha Jonnalagadda, Sravan K Jonnalagadda, Kaija Kottke, Robert Chitren, Joseph L Johnson, Manoj K Pandey, Subash C. Jonnalagadda, and Venkatram R Mereddy
Landform type mediates compositional change in a hurricane-disturbed sub-tropical forest, Robert L. Spicer, Ariel E. Lugo, and Nathan Ruhl
Relative Model Fit Does Not Predict Topological Accuracy in Single-Gene Protein Phylogenetics, Stephanie J. Spielman
To Probe Full and Partial Activation of Human Peroxisome Proliferator-Activated Receptors by Pan-Agonist Chiglitazar Using Molecular Dynamics Simulations., Holli-Joi Sullivan, Xiaoyan Wang, Shaina Nogle, Siyan Liao, and Chun Wu
Parallel quorum-sensing system in Vibrio cholerae prevents signal interference inside the host., Samit Watve, Kelsey Barrasso, Sarah A Jung, Kristen J Davis, Lisa A Hawver, Atul Khataokar, Ryan G Palaganas, Matthew B Neiditch, Lark Perez, and Wai-Leung Ng
Framework for the natures of negativity in introductory physics, Suzanne White Brahmia, Alexis Olsho, Trevor Smith, and Andrew Boudreaux
Approximating Special Social Influence Maximization Problems, Jie Wu and Ning Wang
Electrospun Silk-Boron Nitride Nanofibers with Tunable Structure and Properties., Ye Xue and Xiao Hu
Comparative Study of Silk-Based Magnetic Materials: Effect of Magnetic Particle Types on the Protein Structure and Biomaterial Properties., Ye Xue, Samuel Lofland, and Xiao Hu
A novel vaccine candidate based on chimeric virus-like particle displaying multiple conserved epitope peptides induced neutralizing antibodies against EBV infection., Xiao Zhang, Bingchun Zhao, Mingmei Ding, Shuo Song, Yinfeng Kang, Yang Yu, Miao Xu, Tong Xiang, Ling Gao, Qisheng Feng, Qinjian Zhao, Mu-Sheng Zeng, Claude Krummenacher, and Yi-Xin Zeng
Submissions from 2019
The history and future of digital health in the field of behavioral medicine., Danielle Arigo, Danielle E Jake-Schoffman, Kathleen Wolin, Ellen Beckjord, Eric B Hekler, and Sherry L Pagoto
Protein and Polysaccharide-Based Magnetic Composite Materials for Medical Applications., Elizabeth J Bealer, Kyril Kavetsky, Sierra Dutko, Samuel Lofland, and Xiao Hu
The Perceived Tightness Scale Does Not Provide Reliable Estimates of Blood Flow Restriction Pressure., Zachary W Bell, Scott J. Dankel, Robert W Spitz, Raksha N Chatakondi, Takashi Abe, and Jeremy P Loenneke
Meox2 Haploinsufficiency Accelerates Axonal Degeneration in DBA/2J Glaucoma, Rebecca A Buchanan, Kate E Foley, Keating W Pepper, Alaina M Reagan, Kelly J Keezer, Amanda A Hewes, Cory A Diemler, Christoph Preuss, Ileana Soto Reyes, Simon W M John, and Gareth R Howell
Correlating Lipid Membrane Permeabilities of Imidazolium Ionic Liquids with Their Cytotoxicities on Yeast, Bacterial, and Mammalian Cells, Kendall Cook, Katharine Tarnawsky, Alana J. Swinton, Daniel D. Yang, Alexandria S. Senetra, Gregory A. Caputo, Benjamin Carone, and Timothy Vaden
Pyrenylpyridines: Sky-Blue Emitters for Organic Light-Emitting Diodes, Thenahandi Prasanthi Deepthika Silva, Sang Gil Youm, George G. Tamas, Boqian Yang, Chun-Han Wang, Frank R. Fronczek, Girija Sahasrabudhe, Sierra Sterling, Rashanique Quarels, and et al
Preparing Students for a Bright Outlook: Survey of the Preparation of High School Counselors for Advising on Technician Careers, Sarah Ferguson, Benita Kluttz-Drye, and Katrina A. Hovey
Inhibition of Pseudomonas aeruginosa Biofilm Formation with Surface Modified Polymeric Nanoparticles, T. R. Flockton, L. Schnorbus, A. Araujo, J. Adams, m. Hammel, and Lark Perez
Strictinin, a novel ROR1-inhibitor, represses triple negative breast cancer survival and migration via modulation of PI3K/AKT/GSK3ß activity., Norman Fultang, Abhinav Illendula, Brian Chen, Chun Wu, Subash C. Jonnalagadda, Nathan Baird, Zachary Klase, and Bela Peethambaran
Interaction between nectin-1 and the human natural killer cell receptor CD96., Veronica M Holmes, Carlos Maluquer de Motes, Paige T Richards, Jessenia Roldan, Arjun K Bhargava, Jordan S Orange, and Claude Krummenacher
Increased interactions and engulfment of dendrites by microglia precede Purkinje cell degeneration in a mouse model of Niemann Pick Type-C., Larisa Kavetsky, Kayla K Green, Bridget R Boyle, Fawad A K Yousufzai, Zachary M Padron, Sierra E Melli, Victoria L Kuhnel, Harriet M Jackson, Rosa E Blanco, Gareth R Howell, and Ileana Soto Reyes
Effects of Ionic Liquid Alkyl Chain Length on Denaturation of Myoglobin by Anionic, Cationic, and Zwitterionic Detergents, Joshua Y. Lee, Katherine M. Selfridge, Eric M. Kohn, Timothy Vaden, and Gregory A. Caputo
Binding of BRACO19 to a Telomeric G-Quadruplex DNA Probed by All-Atom Molecular Dynamics Simulations with Explicit Solvent., Babitha Machireddy, Holli-Joi Sullivan, and Chun Wu
Electrochemical reduction of artemisinin: Chromatographic identification of bulk electrolysis products, Faja Ombwayo, Zahilis Mazzhichette, and Amos Mugweru
Enhancing face validity of mouse models of Alzheimer's disease with natural genetic variation., Kristen D Onos, Asli Uyar, Kelly J Keezer, Harriet M Jackson, Christoph Preuss, Casey J Acklin, Rita O'Rourke, Rebecca Buchanan, Travis L Cossette, Stacey J Sukoff Rizzo, Ileana Soto Reyes, Gregory W Carter, and Gareth R Howell
Transcranial Direct Current Stimulation of motor cortex enhances running performance., Seung-Bo Park, Dong Jun Sung, Bokyung Kim, SoJung Kim, and Joung-Kyue Han
Curricula for empathy and compassion training in medical education: A systematic review., Sundip Patel, Alexis Pelletier-Bui, Stephanie Smith, Michael Roberts, Hope Kilgannon, Stephen Trzeciak, and Brian W Roberts
Rating mechanisms for sustainability of crowdsourcing platforms, Chenxi Qiu, Anna Squicciarini, and Sarah Rajtmajer
Community composition of zooplankton exported from a shallow polymictic reservoir linked to wind conditions, Nathan Ruhl, Desireé Haban, Caitlyn Czajkowski, Michael Grove, and Courtney Richmond
3D-QSAR, molecular docking, and dynamics simulation of quinazoline-phosphoramidate mustard conjugates as EGFR inhibitor, Ruslin Ruslin, Amelia Resky, Yamin Yamin, Sandra Megantara, Chun Wu, and Muhammad Arba
Bone-Loading Physical Activity and Alcohol Intake but not BMI Affect Areal Bone Mineral Density in Young College-Aged Korean Women: A Cross-Sectional Study., Dong Jun Sung, Harshvardhan Singh, Seung-Bum Oh, and SoJung Kim
Conductivity, Viscosity, Spectroscopic Properties of Organic Sulfonic Acid solutions in Ionic Liquids, A. T. Tran, J. Tomlin, P. H. Lam, B. L. Stinger, A. D. Miller, D. J. Walczyk, O. Cruz, Timothy Vaden, and Lei Yu
Ethanolamine regulates CqsR quorum-sensing signaling in Vibrio cholerae, Samit Watve, Kelsey Barrasso, Sarah A. Jung, Kristen J. Davis, Lisa A. Hawver, Atul Khataokar, Ryan G. Palaganas, Matthew B. Neiditch, Lark Perez, and Wai-Leung Ng
Thermal Conductivity of Protein-Based Materials: A Review, Ye Xue, Samuel Lofland, and Xiao Hu
FisherMP: fully parallel algorithm for detecting combinatorial motifs from large ChIP-seq datasets., Shaoqiang Zhang, Ying Liang, Xiangyun Wang, Zhengchang Su, and Yong Chen
Exploiting Mobile Social Networks from Temporal Perspective: A Survey, Huan Zhou, Hui Wang, Ning Wang, Dawei Li, Yue Cao, Xiuhua Li, and Jie Wu
Saliva enhances infection of gingival fibroblasts by herpes simplex virus 1., Yi Zuo, J Charles Whitbeck, Gabriel J Haila, Abraham A Hakim, Paul W Rothlauf, Roselyn J Eisenberg, Gary H Cohen, and Claude Krummenacher
Submissions from 2018
Role of Microvesicles in the Spread of Herpes Simplex Virus 1 in Oligodendrocytic Cells, Raquel Bello-Morales, Beatriz Praena, Carmen de la Nuez, María Rejas, Milagros Guerra, Marcos Galán-Ganga, Manuel Izquierdo, Víctor Calvo, Claude Krummenacher, and José López-Guerrero
A new model of wheezing severity in young children using the validated ISAAC wheezing module: A latent variable approach with validation in independent cohorts., Steven M. Brunwasser PhD, Tebeb Gebretsadik, Diane R Gold, Kedir N Turi, Cosby A Stone, Soma Datta, James E Gern, and Tina V Hartert
Comparative Investigation of Thermal and Structural Behavior in Renewably Sourced Composite Films of Even-Even Nylons (610 and 1010) with Silk Fibroin, Kayla Calloway, Ye Xue, Vincent Altimari, Guoxiang Jiang, and Xiao Hu
Protein Polymer-Based Nanoparticles: Fabrication and Medical Applications, Kelsey DeFrates, Theodore Markiewicz, Pamela Gallo, Aaron Rack, Aubrie Weyhmiller, Brandon Jarmusik, and Xiao Hu
Protein-Based Fiber Materials in Medicine: A Review, Kelsey DeFrates, Robert Moore, Julia Borgesi, Guowei Lin, Thomas Mulderig, Vincent Beachley, and Xiao Hu
Mindfulness Meditation Targets Transdiagnostic Symptoms Implicated in Stress-Related Disorders: Understanding Relationships between Changes in Mindfulness, Sleep Quality, and Physical Symptoms, Jeffrey M. Greeson, Haley Zarrin, Moria Smoski, Jeffrey Brantley, Thomas Lynch, Daniel Webber, Martica Hall, Edward Suarez, and Ruth Wolever
Moving Target Defense for Securing SCADA Communications, Vahid Heydari
Molecular dynamics study of homo-oligomeric ion channels: Structures of the surrounding lipids and dynamics of water movement, Thuy Hien Nguyen, Catherine C. Moore, Preston B. Moore, and Zhiwei Liu
Association between bone-specific physical activity scores and pQCT-derived measures of bone strength and geometry in healthy young and middle-aged premenopausal women., SoJung Kim, Breanne S Baker, Pragya Sharma-Ghimire, Debra A Bemben, and Michael G Bemben
Heme Dissociation from Myoglobin in the Presence of the Zwitterionic Detergent N,N-Dimethyl-N-Dodecylglycine Betaine: Effects of Ionic Liquids, Eric M. Kohn, Joshua Y. Lee, Anthony Calabro, Timothy Vaden, and Gregory A. Caputo
Role of Cationic Side Chains in the Antimicrobial Activity of C18G., Eric M Kohn, David J Shirley, Lubov Arotsky, Angela M Picciano, Zachary Ridgway, Michael W Urban, Benjamin Carone, and Gregory Caputo
